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cellcyclegenes_whitfield2002
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List of Cell Cycle Genes Identified in Whitfield et al, 2002. |
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circ_dist()
|
Pairwise Distance Between Two Circular Variables |
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cycle_npreg_insample()
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Obtain Cyclic Trend Estimates from Training Data |
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cycle_npreg_outsample()
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Predict Test-sample Ordering Using Training Labels |
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data_transform_quantile()
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Quantile-normalize CPM for Each Gene |
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fit_bspline()
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Estimate Cyclic Trends in Gene Expression Levels Using B-splines |
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fit_cyclical_many()
|
Estimate Cyclic Trend For Several Genes Using Trendfiltering |
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fit_loess()
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Estimate Cyclic Trends of Expression Values Using Loess |
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fit_trendfilter()
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Estimate Cyclic Trend of Gene Expression Using Trendfiltering |
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intensity2circle()
|
Infer Angles for Single-cell Samples Using Fluorescence
Intensities |
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model_5genes_predict
|
Cell-Cycle Predictions using 5 Genes |
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model_5genes_train
|
Model Training Results for 5 Genes |
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rotation()
|
Rotate Circular Variable to Minimize Distance Between
Variables. |
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sce_top101genes
|
Molecule Counts of the 101 Significant Cyclical Genes in the
888 samples Analyzed in the Study. |
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shift_origin()
|
Shift Origin of Angles |
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training_human
|
Training Data from the Top 101 Cyclic Genes in 888
Single-cell Samples |