peco is an R package for PrEdicting Cell cycle prOgression in a continuum using scRNA-seq data. peco provides functions to build a training data set and predict cell cycle on a continuum.
Installation
To install and load the package, run:
install.packages("devtools") devtools::install_github("jhsiao999/peco") library(peco)
For for a detailed illustration of peco, see the vignette.
Contact
Please contact Joyce Hsiao at joyce.hsiao1@gmail.com for questions on the package or the methods.
How to cite
Hsiao, C. J., Tung, P., Blischak, J. D., Burnett, J., Dey, K. K., Barr, A. K., Stephens, M., and Gilad, Y. (2020). Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis. Genome Biology, 30(4): 611-621, doi:10.1101/gr.247759.11
License
Copyright (c) 2019-2020, Joyce Hsiao.
All source code and software in this repository are made available under the terms of the GNU General Public License. See file LICENSE for the full text of the license.
