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Last updated: 2018-04-22

Code version: cefceef

Data processing steps are as follows:

  1. QIIME for read alignment

  2. Build MRexperiment object

  3. Filtering samples and OTUs

  4. Normalization and Batch correction

Data ouptut at each step are stored in data/ folder

Session information

R version 3.4.1 (2017-06-30)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] compiler_3.4.1  backports_1.1.2 magrittr_1.5    rprojroot_1.3-2
 [5] tools_3.4.1     htmltools_0.3.6 yaml_2.1.18     Rcpp_0.12.15   
 [9] stringi_1.1.6   rmarkdown_1.9   knitr_1.20      git2r_0.21.0   
[13] stringr_1.3.0   digest_0.6.15   evaluate_0.10.1

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